Refactored analytics class
This commit is contained in:
parent
06ac295e17
commit
0c21073e88
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@ -1,36 +1,63 @@
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import duckdb
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import os
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import os
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from enum import StrEnum
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from pathlib import Path
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import duckdb
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from typing_extensions import Self
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from typing_extensions import Self
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class StorageEngines(StrEnum):
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local = "Local"
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gcs = "GCS"
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class DDB:
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class DDB:
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def __init__(self):
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def __init__(self, storage_engine: StorageEngines, **kwargs):
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"""Write documentation"""
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self.db = duckdb.connect()
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self.db = duckdb.connect()
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self.db.install_extension("spatial")
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self.db.install_extension("spatial")
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self.db.install_extension("httpfs")
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self.db.install_extension("httpfs")
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self.db.load_extension("spatial")
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self.db.load_extension("spatial")
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self.db.load_extension("httpfs")
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self.db.load_extension("httpfs")
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self.sheets = tuple()
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self.sheets = tuple()
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self.path = ""
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self.loaded = False
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def gcs_secret(self, gcs_access: str, gcs_secret: str) -> Self:
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if storage_engine == StorageEngines.gcs:
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self.db.sql(f"""
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if (
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CREATE SECRET (
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"gcs_access" in kwargs
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TYPE GCS,
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and "gcs_secret" in kwargs
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KEY_ID '{gcs_access}',
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and "bucketname" in kwargs
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SECRET '{gcs_secret}')
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and "sid" in kwargs
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""")
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):
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self.db.sql(f"""
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CREATE SECRET (
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TYPE GCS,
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KEY_ID '{kwargs["gcs_access"]}',
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SECRET '{kwargs["gcs_secret"]}')
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""")
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self.path_prefix = f"gcs://{kwargs["bucket"]}/sessions/{kwargs['sid']}"
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else:
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raise ValueError(
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"With GCS storage engine you need to provide "
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"the gcs_access, gcs_secret and bucket keyword arguments"
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)
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return self
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elif storage_engine == StorageEngines.local:
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if "path" in kwargs:
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self.path_prefix = kwargs["path"]
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else:
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raise ValueError(
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"With local storage you need to provide the path keyword argument"
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)
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def load_metadata(self, path: str = "") -> Self:
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def load_xls(self, xls_path: Path) -> Self:
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"""For some reason, the header is not loaded"""
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"""For some reason, the header is not loaded"""
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self.db.sql(f"""
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self.db.sql(f"""
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create table metadata as (
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create table metadata as (
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select
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select
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*
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*
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from
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from
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st_read('{path}',
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st_read('{xls_path}',
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layer='metadata'
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layer='metadata'
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)
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)
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)""")
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)""")
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@ -39,62 +66,45 @@ class DDB:
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.fetchall()[0][0]
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.fetchall()[0][0]
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.split(";")
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.split(";")
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)
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)
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self.path = path
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return self
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def dump_local(self, path) -> Self:
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# TODO: Port to fsspec and have a single dump file
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self.db.query(f"copy metadata to '{path}/metadata.csv'")
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for sheet in self.sheets:
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for sheet in self.sheets:
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self.db.query(f"""
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self.db.query(f"""
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copy
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create table {sheet} as
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(
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(
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select
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select
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*
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*
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from
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from
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st_read
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st_read
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(
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(
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'{self.path}',
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'{xls_path}',
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layer = '{sheet}'
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layer = '{sheet}'
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)
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)
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)
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)
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to '{path}/{sheet}.csv'
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""")
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""")
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self.loaded = True
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return self
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return self
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def dump_gcs(self, bucketname, sid) -> Self:
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def dump(self) -> Self:
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self.db.sql(
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# TODO: Create a decorator
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f"copy metadata to 'gcs://{bucketname}/sessions/{sid}/metadata.csv'"
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if not self.loaded:
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)
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raise ValueError("Data should be loaded first")
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self.db.query(f"copy metadata to '{self.path_prefix}/metadata.csv'")
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for sheet in self.sheets:
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for sheet in self.sheets:
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self.db.query(f"""
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self.db.query(f"copy {sheet} to '{self.path_prefix}/{sheet}.csv'")
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copy
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(
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select
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*
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from
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st_read
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(
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'{self.path}',
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layer = '{sheet}'
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)
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)
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to 'gcs://{bucketname}/sessions/{sid}/{sheet}.csv'
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""")
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return self
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return self
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def load_folder_local(self, path: str) -> Self:
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def load_folder(self) -> Self:
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self.sheets = tuple(
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self.sheets = tuple(
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self.query(
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self.query(
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f"""
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f"""
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select
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select
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Field2
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Field2
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from
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from
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read_csv_auto('{path}/metadata.csv')
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read_csv_auto('{self.path_prefix}/metadata.csv')
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where
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where
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Field1 = 'Sheets'
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Field1 = 'Sheets'
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"""
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"""
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@ -110,61 +120,21 @@ class DDB:
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select
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select
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*
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*
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from
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from
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read_csv_auto('{path}/{sheet}.csv')
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read_csv_auto('{self.path_prefix}/{sheet}.csv')
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)
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)
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""")
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""")
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return self
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self.loaded = True
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def load_folder_gcs(self, bucketname: str, sid: str) -> Self:
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self.sheets = tuple(
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self.query(
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f"""
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select
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Field2
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from
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read_csv_auto(
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'gcs://{bucketname}/sessions/{sid}/metadata.csv'
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)
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where
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Field1 = 'Sheets'
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"""
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)
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.fetchall()[0][0]
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.split(";")
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)
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# Load all the tables into the database
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for sheet in self.sheets:
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self.db.query(f"""
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create table {sheet} as (
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select
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*
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from
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read_csv_auto('gcs://{bucketname}/sessions/{sid}/{sheet}.csv')
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)
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""")
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return self
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return self
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def load_description_local(self, path: str) -> Self:
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def load_description(self) -> Self:
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return self.query(
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return self.query(
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f"""
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f"""
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select
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select
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Field2
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Field2
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from
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from
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read_csv_auto('{path}/metadata.csv')
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read_csv_auto('{self.path_prefix}/metadata.csv')
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where
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Field1 = 'Description'"""
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).fetchall()[0][0]
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def load_description_gcs(self, bucketname: str, sid: str) -> Self:
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return self.query(
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f"""
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select
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Field2
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from
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read_csv_auto('gcs://{bucketname}/sessions/{sid}/metadata.csv')
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where
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where
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Field1 = 'Description'"""
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Field1 = 'Description'"""
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).fetchall()[0][0]
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).fetchall()[0][0]
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@ -182,9 +152,11 @@ class DDB:
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f"select column_name, column_type from (describe {table})"
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f"select column_name, column_type from (describe {table})"
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).fetchall()
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).fetchall()
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)
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)
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+ [os.linesep]
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)
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)
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def db_schema(self):
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@property
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def schema(self):
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return os.linesep.join(
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return os.linesep.join(
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[
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[
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"The schema of the database is the following:",
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"The schema of the database is the following:",
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@ -194,3 +166,18 @@ class DDB:
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def query(self, sql, *args, **kwargs):
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def query(self, sql, *args, **kwargs):
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return self.db.query(sql, *args, **kwargs)
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return self.db.query(sql, *args, **kwargs)
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def query_prompt(self, user_prompt: str) -> str:
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query = (
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f"The following sentence is the description of a query that "
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f"needs to be executed in a database: {user_prompt}"
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)
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return os.linesep.join(
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[
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query,
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self.schema,
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self.load_description(),
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"Return just the SQL statement",
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]
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)
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@ -6,7 +6,7 @@ class Settings(BaseSettings):
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gcs_access: str = "access"
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gcs_access: str = "access"
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gcs_secret: str = "secret"
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gcs_secret: str = "secret"
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gcs_bucketname: str = "bucket"
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gcs_bucketname: str = "bucket"
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auth: bool = False
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auth: bool = True
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model_config = SettingsConfigDict(env_file=".env")
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model_config = SettingsConfigDict(env_file=".env")
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@ -6,7 +6,7 @@ from pydantic import BaseModel
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import hellocomputer
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import hellocomputer
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from .routers import files, sessions, analysis
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from .routers import analysis, files, sessions
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static_path = Path(hellocomputer.__file__).parent / "static"
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static_path = Path(hellocomputer.__file__).parent / "static"
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from enum import StrEnum
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from enum import StrEnum
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from langchain_community.chat_models import ChatAnyscale
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from langchain_community.chat_models import ChatAnyscale
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from langchain_core.messages import HumanMessage, SystemMessage
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from langchain_core.messages import HumanMessage, SystemMessage
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@ -1,41 +1,29 @@
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import os
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from fastapi import APIRouter
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from fastapi import APIRouter
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from fastapi.responses import PlainTextResponse
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from fastapi.responses import PlainTextResponse
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from ..config import settings
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from hellocomputer.analytics import DDB, StorageEngines
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from ..models import Chat
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from hellocomputer.analytics import DDB
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from hellocomputer.extraction import extract_code_block
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from hellocomputer.extraction import extract_code_block
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import os
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from ..config import settings
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from ..models import Chat
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router = APIRouter()
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router = APIRouter()
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@router.get("/query", response_class=PlainTextResponse, tags=["queries"])
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@router.get("/query", response_class=PlainTextResponse, tags=["queries"])
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async def query(sid: str = "", q: str = "") -> str:
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async def query(sid: str = "", q: str = "") -> str:
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print(q)
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query = f"Write a query that {q} in the current database"
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chat = Chat(api_key=settings.anyscale_api_key, temperature=0.5)
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chat = Chat(api_key=settings.anyscale_api_key, temperature=0.5)
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db = (
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db = DDB(
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DDB()
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StorageEngines.gcs,
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.gcs_secret(settings.gcs_access, settings.gcs_secret)
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gcs_access=settings.gcs_access,
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.load_folder_gcs(settings.gcs_bucketname, sid)
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gcs_secret=settings.gcs_secret,
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)
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bucket=settings.gcs_bucketname,
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sid=sid,
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).load_folder()
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prompt = os.linesep.join(
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chat = await chat.eval("You're an expert sql developer", db.query_prompt())
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[
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query,
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db.db_schema(),
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db.load_description_gcs(settings.gcs_bucketname, sid),
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"Return just the SQL statement",
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]
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)
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print(prompt)
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chat = await chat.eval("You're an expert sql developer", prompt)
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query = extract_code_block(chat.last_response_content())
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query = extract_code_block(chat.last_response_content())
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result = str(db.query(query))
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result = str(db.query(query))
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print(result)
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print(result)
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@ -1,21 +1,22 @@
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import aiofiles
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import aiofiles
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import s3fs
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# import s3fs
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from fastapi import APIRouter, File, UploadFile
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from fastapi import APIRouter, File, UploadFile
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from fastapi.responses import JSONResponse
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from fastapi.responses import JSONResponse
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from ..analytics import DDB, StorageEngines
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from ..config import settings
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from ..config import settings
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from ..analytics import DDB
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router = APIRouter()
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router = APIRouter()
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# Configure the S3FS with your Google Cloud Storage credentials
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# Configure the S3FS with your Google Cloud Storage credentials
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gcs = s3fs.S3FileSystem(
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# gcs = s3fs.S3FileSystem(
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key=settings.gcs_access,
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# key=settings.gcs_access,
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secret=settings.gcs_secret,
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# secret=settings.gcs_secret,
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client_kwargs={"endpoint_url": "https://storage.googleapis.com"},
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# client_kwargs={"endpoint_url": "https://storage.googleapis.com"},
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)
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# )
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bucket_name = settings.gcs_bucketname
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# bucket_name = settings.gcs_bucketname
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@router.post("/upload", tags=["files"])
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@router.post("/upload", tags=["files"])
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@ -26,10 +27,15 @@ async def upload_file(file: UploadFile = File(...), sid: str = ""):
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await f.flush()
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await f.flush()
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(
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(
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DDB()
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DDB(
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.gcs_secret(settings.gcs_access, settings.gcs_secret)
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StorageEngines.gcs,
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.load_metadata(f.name)
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gcs_access=settings.gcs_access,
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.dump_gcs(settings.gcs_bucketname, sid)
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gcs_secret=settings.gcs_secret,
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bucket=settings.gcs_bucketname,
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sid=sid,
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)
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.load_xls(f.name)
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.dump()
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)
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)
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return JSONResponse(
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return JSONResponse(
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@ -1,22 +1,16 @@
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from uuid import uuid4
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from typing import Annotated
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from typing import Annotated
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from uuid import uuid4
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from fastapi import APIRouter, Depends
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from fastapi import APIRouter, Depends
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from fastapi.responses import PlainTextResponse
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from fastapi.responses import PlainTextResponse
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from ..config import settings
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from ..security import oauth2_scheme
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from ..security import oauth2_scheme
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# Scheme for the Authorization header
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# Scheme for the Authorization header
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router = APIRouter()
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router = APIRouter()
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if settings.auth:
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@router.get("/token")
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async def get_token() -> str:
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return str(uuid4())
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@router.get("/new_session")
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@router.get("/new_session")
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async def get_new_session(token: Annotated[str, Depends(oauth2_scheme)]) -> str:
|
async def get_new_session(token: Annotated[str, Depends(oauth2_scheme)]) -> str:
|
||||||
return str(uuid4())
|
return str(uuid4())
|
||||||
|
|
|
@ -1,40 +1,52 @@
|
||||||
import hellocomputer
|
|
||||||
from hellocomputer.analytics import DDB
|
|
||||||
from pathlib import Path
|
from pathlib import Path
|
||||||
|
|
||||||
TEST_DATA_FOLDER = Path(hellocomputer.__file__).parents[2] / "test" / "data"
|
import hellocomputer
|
||||||
|
from hellocomputer.analytics import DDB, StorageEngines
|
||||||
|
|
||||||
|
TEST_STORAGE = StorageEngines.local
|
||||||
|
TEST_XLS_PATH = (
|
||||||
|
Path(hellocomputer.__file__).parents[2]
|
||||||
|
/ "test"
|
||||||
|
/ "data"
|
||||||
|
/ "TestExcelHelloComputer.xlsx"
|
||||||
|
)
|
||||||
TEST_OUTPUT_FOLDER = Path(hellocomputer.__file__).parents[2] / "test" / "output"
|
TEST_OUTPUT_FOLDER = Path(hellocomputer.__file__).parents[2] / "test" / "output"
|
||||||
|
|
||||||
|
|
||||||
def test_dump():
|
def test_0_dump():
|
||||||
db = (
|
db = DDB(storage_engine=TEST_STORAGE, path=TEST_OUTPUT_FOLDER)
|
||||||
DDB()
|
db.load_xls(TEST_XLS_PATH).dump()
|
||||||
.load_metadata(TEST_DATA_FOLDER / "TestExcelHelloComputer.xlsx")
|
|
||||||
.dump_local(TEST_OUTPUT_FOLDER)
|
|
||||||
)
|
|
||||||
|
|
||||||
assert db.sheets == ("answers",)
|
assert db.sheets == ("answers",)
|
||||||
assert (TEST_OUTPUT_FOLDER / "answers.csv").exists()
|
assert (TEST_OUTPUT_FOLDER / "answers.csv").exists()
|
||||||
|
|
||||||
|
|
||||||
def test_load():
|
def test_load():
|
||||||
db = DDB().load_folder_local(TEST_OUTPUT_FOLDER)
|
db = DDB(storage_engine=TEST_STORAGE, path=TEST_OUTPUT_FOLDER).load_folder()
|
||||||
|
|
||||||
assert db.sheets == ("answers",)
|
|
||||||
|
|
||||||
results = db.query("select * from answers").fetchall()
|
results = db.query("select * from answers").fetchall()
|
||||||
assert len(results) == 6
|
assert len(results) == 6
|
||||||
|
|
||||||
|
|
||||||
def test_load_description():
|
def test_load_description():
|
||||||
file_description = DDB().load_description_local(TEST_OUTPUT_FOLDER)
|
db = DDB(storage_engine=TEST_STORAGE, path=TEST_OUTPUT_FOLDER).load_folder()
|
||||||
|
file_description = db.load_description()
|
||||||
assert file_description.startswith("answers")
|
assert file_description.startswith("answers")
|
||||||
|
|
||||||
|
|
||||||
def test_schema():
|
def test_schema():
|
||||||
db = DDB().load_folder_local(TEST_OUTPUT_FOLDER)
|
db = DDB(storage_engine=TEST_STORAGE, path=TEST_OUTPUT_FOLDER).load_folder()
|
||||||
schema = []
|
schema = []
|
||||||
for sheet in db.sheets:
|
for sheet in db.sheets:
|
||||||
schema.append(db.table_schema(sheet))
|
schema.append(db.table_schema(sheet))
|
||||||
|
|
||||||
assert schema[0].startswith("Table name:")
|
print(db.schema)
|
||||||
|
|
||||||
|
assert db.schema.startswith("The schema of the database")
|
||||||
|
|
||||||
|
|
||||||
|
def test_query_prompt():
|
||||||
|
db = DDB(storage_engine=TEST_STORAGE, path=TEST_OUTPUT_FOLDER).load_folder()
|
||||||
|
|
||||||
|
assert db.query_prompt("Find the average score of all students").startswith(
|
||||||
|
"The following sentence"
|
||||||
|
)
|
||||||
|
|
|
@ -1,14 +1,19 @@
|
||||||
import pytest
|
|
||||||
import os
|
import os
|
||||||
import hellocomputer
|
|
||||||
from hellocomputer.config import settings
|
|
||||||
from hellocomputer.models import Chat
|
|
||||||
from hellocomputer.extraction import extract_code_block
|
|
||||||
from pathlib import Path
|
from pathlib import Path
|
||||||
|
|
||||||
|
import hellocomputer
|
||||||
|
import pytest
|
||||||
from hellocomputer.analytics import DDB
|
from hellocomputer.analytics import DDB
|
||||||
|
from hellocomputer.config import settings
|
||||||
|
from hellocomputer.extraction import extract_code_block
|
||||||
|
from hellocomputer.models import Chat
|
||||||
|
|
||||||
|
TEST_XLS_PATH = (
|
||||||
TEST_OUTPUT_FOLDER = Path(hellocomputer.__file__).parents[2] / "test" / "output"
|
Path(hellocomputer.__file__).parents[2]
|
||||||
|
/ "test"
|
||||||
|
/ "data"
|
||||||
|
/ "TestExcelHelloComputer.xlsx"
|
||||||
|
)
|
||||||
|
|
||||||
|
|
||||||
@pytest.mark.asyncio
|
@pytest.mark.asyncio
|
||||||
|
@ -29,13 +34,13 @@ async def test_simple_data_query():
|
||||||
query = "write a query that finds the average score of all students in the current database"
|
query = "write a query that finds the average score of all students in the current database"
|
||||||
|
|
||||||
chat = Chat(api_key=settings.anyscale_api_key, temperature=0.5)
|
chat = Chat(api_key=settings.anyscale_api_key, temperature=0.5)
|
||||||
db = DDB().load_folder_local(TEST_OUTPUT_FOLDER)
|
db = DDB().load_xls(TEST_XLS_PATH)
|
||||||
|
|
||||||
prompt = os.linesep.join(
|
prompt = os.linesep.join(
|
||||||
[
|
[
|
||||||
query,
|
query,
|
||||||
db.db_schema(),
|
db.schema(),
|
||||||
db.load_description_local(TEST_OUTPUT_FOLDER),
|
db.load_description(),
|
||||||
"Return just the SQL statement",
|
"Return just the SQL statement",
|
||||||
]
|
]
|
||||||
)
|
)
|
||||||
|
|
Loading…
Reference in a new issue